@presentation {herrmann2026SEGWSfwi,
	title = {Amortized Full-Waveform Inference w/ Learned Summary Statistics},
	year = {2026},
	month = {2},
	keywords = {amortized Bayes, conditional normalizing flows, deep learning, FWI, generative AI, inversion, machine learning, Normalizing flows, SEG, SLIM, Summary Statistics, Uncertainty quantification, Variational Inference},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/SEG/2026/herrmann2026SEGWSfwi},
	author = {Rafael Orozco and Ziyi Yin and Mathias Louboutin and Shiqin Zeng and Felix J. Herrmann}
}
@article {orozco2024IPaspire,
	title = {ASPIRE: Iterative Amortized Posterior Inference for Bayesian Inverse Problems},
	journal = {Inverse Problems},
	volume = {41},
	year = {2025},
	note = {(Inverse Problems)},
	month = {3},
	abstract = {Due to their uncertainty quantification, Bayesian solutions to inverse problems are the framework of choice in applications that are risk averse. These benefits come at the cost of computations that are in general, intractable. New advances in machine learning and variational inference (VI) have lowered the computational barrier by learning from examples. Two VI paradigms have emerged that represent different tradeoffs: amortized and non-amortized. Amortized VI can produce fast results but due to generalizing to many observed datasets it produces suboptimal inference results. Non-amortized VI is slower at inference but finds better posterior approximations since it is specialized towards a single observed dataset. Current amortized VI techniques run into a sub-optimality wall that can not be improved without more expressive neural networks or extra training data. We present a solution that enables iterative improvement of amortized posteriors that uses the same networks architectures and training data. The benefits of our method requires extra computations but these remain frugal since they are based on physics-hybrid methods and summary statistics. Importantly, these computations remain mostly offline thus our method maintains cheap and reusable online evaluation while bridging the approximation gap these two paradigms. We denote our proposed method ASPIRE - Amortized posteriors with Summaries that are Physics-based and Iteratively REfined. We first validate our method on a stylized problem with a known posterior then demonstrate its practical use on a high-dimensional and nonlinear transcranial medical imaging problem with ultrasound. Compared with the baseline and previous methods from the literature our method stands out as an computationally efficient and high-fidelity method for posterior inference.},
	keywords = {Amortization Gap, Amortized Variational Inference, Bayesian inference, medical imaging, Normalizing flows, simulation-based inference},
	doi = {10.1088/1361-6420/adba3d},
	url = {https://doi.org/10.1088/1361-6420/adba3d},
	author = {Rafael Orozco and Ali Siahkoohi and Mathias Louboutin and Felix J. Herrmann}
}
@conference {orozco2023IMAGEabf,
	title = {Amortized Bayesian Full Waveform Inversion and Experimental Design with Normalizing Flows},
	booktitle = {International Meeting for Applied Geoscience and Energy},
	year = {2023},
	note = {(IMAGE, Houston)},
	month = {08},
	abstract = {Probabilistic approaches to Full-Waveform Inversion (FWI), such as Bayesian ones, traditionally require expensive computations involving many wave-equation solves. To reduce the computational burden at test time, we propose to amortize the computational cost with offline training. After training, we aim to efficiently generate probabilistic FWI solutions with uncertainty. This aim is achieved by exploiting the ability of networks (i.e Normalizing Flows) to learn distributions, such as the Bayesian posterior. The posterior uncertainty is used during training to optimize the receiver sampling.},
	keywords = {bayesian, experimental design, FWI, Normalizing flows, SEG, Uncertainty quantification},
	url = {https://slimgroup.github.io/IMAGE2023/BayesianFWI/abstract.html},
	presentation = {https://slim.gatech.edu/Publications/Public/Conferences/SEG/2023/orozco2023IMAGEabf},
	author = {Rafael Orozco and Mathias Louboutin and Felix J. Herrmann}
}
@conference {orozco2023MIDLanf,
	title = {Amortized normalizing flows for transcranial ultrasound with uncertainty quantification},
	booktitle = {Medical Imaging with Deep Learning},
	year = {2023},
	note = {(MIDL, Nashville)},
	month = {07},
	abstract = {We present a novel approach to transcranial ultrasound computed tomography that utilizes normalizing flows to improve the speed of imaging and provide Bayesian uncertainty quantification. Our method combines physics-informed methods and data-driven methods to accelerate the reconstruction of the final image. We make use of a physics-informed summary statistic to incorporate the known ultrasound physics with the goal of compressing large incoming observations. This compression enables efficient training of the normalizing flow and standardizes the size of the data regardless of imaging configurations. The combinations of these methods results in fast uncertainty-aware image reconstruction that generalizes to a variety of transducer configurations. We evaluate our approach with in silico experiments and demonstrate that it can significantly improve the imaging speed while quantifying uncertainty. We validate the quality of our image reconstructions by comparing against the traditional physics-only method and also verify that our provided uncertainty is calibrated with the error.},
	keywords = {Bayesian Estimation, invertible networks, medical imaging, MIDL, Physics and Machine Learning Hybrid, Uncertainty quantification},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/MIDL/2023/orozco2023MIDLanf/paper.pdf},
	author = {Rafael Orozco and Mathias Louboutin and Ali Siahkoohi and Gabrio Rizzuti and Tristan van Leeuwen and Felix J. Herrmann}
}
@conference {louboutin2022SEGWSaaa,
	title = {Abstractions and algorithms for efficient seismic inversion on accelerators},
	booktitle = {IMAGE Workshop on What{\textquoteright}s Next for FWI and its Derived Products},
	year = {2022},
	note = {(IMAGE Workshop, Houston)},
	month = {09},
	abstract = {We present the SLIM open-source software framework for computational geophysics, and more generally, inverse problems based on the wave-equation (e.g., medical ultrasound). We developed a software environment aimed at scalable research and development by designing multiple layers of abstractions. This environment allows the researchers to easily formulate their problem in an abstract fashion, while still being able to exploit the latest developments in high-performance computing. We illustrate and demonstrate the benefits of our software design on many geophysical applications, including seismic inversion and physics-informed machine learning for geophysics (e.g., loop unrolled imaging, uncertainty quantification), all while facilitating the integration of external software.},
	keywords = {algorithms, deep learning, devito, FWI, Imaging, JUDI, LSRTM, SEG, software, workshop},
	url = {https://www.imageevent.org/Workshop/next-fwi-derived-products},
	presentation = {https://slim.gatech.edu/Publications/Public/Conferences/SEG/2022/louboutin2022SEGWSaaa/index.html},
	author = {Mathias Louboutin and Felix J. Herrmann}
}
@conference {louboutin2022RHPCafa,
	title = {Abstractions for at-scale seismic inversion},
	booktitle = {Rice Oil and Gas High Performance Computing Conference 2022},
	year = {2022},
	note = {Rice Oil and Gas High Performance Computing Conference 2022},
	month = {03},
	pages = {Thursday Workshop: Devito Training and Hackathon},
	abstract = {We present the SLIM open-source software framework for computational geophysics, and more generally, inverse problems based on the wave-equation (e.g., medical ultrasound). We developed a software environment aimed at scalable research and development by designing multiple layers of abstractions. This environment allows the researchers to easily formulate their problem in an abstract fashion, while still being able to exploit the latest developments in high-performance computing. We illustrate and demonstrate the benefits of our software design on many geophysical applications, including seismic inversion and physics-informed machine learning for geophysics (e.g., loop unrolled imaging, uncertainty quantification), all while facilitating the integration of external software.},
	keywords = {CCS, devito, FWI, HPC, inversion, JUDI, machine learning, RHPC, software, Uncertainty quantification},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/RHPC/2022/louboutin2022RHPCafa/RiceHPC22.pdf},
	url2 = {https://youtu.be/scRTbP8w6Wk?t=4542},
	author = {Mathias Louboutin and Ali Siahkoohi and Ziyi Yin and Rafael Orozco and Thomas J. Grady II and Yijun Zhang and Philipp A. Witte and Gabrio Rizzuti and Felix J. Herrmann}
}
@conference {louboutin2022SEGais,
	title = {Accelerating innovation with software abstractions for scalable computational geophysics},
	booktitle = {International Meeting for Applied Geoscience and Energy Expanded Abstracts},
	year = {2022},
	note = {(IMAGE, Houston)},
	month = {05},
	abstract = {We present the SLIM open-source software framework for computational geophysics, and more generally, inverse problems based on the wave-equation (e.g., medical ultrasound). We developed a software environment aimed at scalable research and development by designing multiple layers of abstractions. This environment allows the researchers to easily formulate their problem in an abstract fashion, while still being able to exploit the latest developments in high-performance computing. We illustrate and demonstrate the benefits of our software design on many geophysical applications, including seismic inversion and physics-informed machine learning for geophysics(e.g., loop unrolled imaging, uncertainty quantification), all while facilitating the integration of external software.},
	keywords = {CCS, devito, FWI, HPC, inversion, JUDI, machine learning, SEG, software, Uncertainty quantification},
	doi = {10.1190/image2022-3750561.1},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/SEG/2022/louboutin2022SEGais/louboutin_seg22.html},
	presentation = {https://slim.gatech.edu/Publications/Public/Conferences/SEG/2022/louboutin2022SEGais/index.html},
	author = {Mathias Louboutin and Philipp A. Witte and Ali Siahkoohi and Gabrio Rizzuti and Ziyi Yin and Rafael Orozco and Felix J. Herrmann}
}
@presentation {orozco2022ML4SEISMICaos,
	title = {Adjoint operators as summary functions in amortized Bayesian inference frameworks},
	year = {2022},
	month = {11},
	abstract = {An important concern in seismic inverse problems is the large and varying size of observed data. The large size can cause computational cost concerns and its varying size (such as when changing receiver geometries) implies the need to rerun inference algorithms from scratch for each new observation. Motivated by these two problems, we take inspiration from the statistics literature which commonly relies on summary statistic of observed data. Summary statistic compress the observed data leaving only information needed for inference. In this work, we argue that the adjoint operator provides a natural candidate for a summary function in the context of physics-based inverse problems. We first mathematically show that for certain general assumptions transforming data under the adjoint operator defines a new conditional distribution which preserves the expectations of the original posterior. We validate our hypothesis by evaluating our framework in a learned amortized inference algorithm. Our seismic and medical synthetic experiments show computational gains and increased quality of point estimates using our framework. We discuss statistical metrics that show our learned posterior is well calibrated therefore justifying its use in uncertainty quantification.},
	keywords = {Amortized Inference, Bayesian inference, deep learning, Inverse problems, machine learning, medical imaging, ML4SEISMIC, Normalizing flows, SLIM, Uncertainty quantification},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/ML4SEISMIC/2022/orozco2022ML4SEISMICaos/index.html},
	author = {Rafael Orozco and Mathias Louboutin and Ali Siahkoohi and Gabrio Rizzuti and Felix J. Herrmann}
}
@presentation {yin2022ML4SEISMICavc,
	title = {Amortized velocity continuation with Fourier neural operators},
	year = {2022},
	month = {11},
	abstract = {Velocity continuation aims to map the migration image using one background model to the image using another background model. It is of great importance to quantify the uncertainty in seismic imaging result from various background models. With Fourier neural operators as a learned surrogate, this continuation from a given background model to an unseen background model can be quite accurately estimated with near-zero cost. However, the limitation of the prior art is that the input background model and the survey area are assumed to be fixed. The main contribution of this work is to extend the Fourier neural operator surrogate to be amortized over different given background models and survey areas. We verify the effectiveness of our learned surrogates by a realistic example on different areas of Parihaka dataset against different background models.},
	keywords = {Fourier neural operators, ML4SEISMIC, SLIM, Uncertainty quantification, velocity continuation},
	url = {https://slim.gatech.edu/Publications/Public/Conferences/ML4SEISMIC/2022/yin2022ML4SEISMICavc/index.html},
	author = {Ali Siahkoohi and Ziyi Yin and Mathias Louboutin and Felix J. Herrmann}
}
@article {luporini2018aap,
	title = {Architecture and performance of Devito, a system for automated stencil computation},
	journal = {ACM Trans. Math. Softw.},
	volume = {46},
	number = {1},
	year = {2020},
	note = {(ACM Trans. Math. Softw.)},
	month = {04},
	abstract = {Stencil computations are a key part of many high-performance computing applications, such as image processing, convolutional neural networks, and finite-difference solvers for partial differential equations. Devito is a framework capable of generating highly-optimized code given symbolic equations expressed in Python, specialized in, but not limited to, affine (stencil) codes. The lowering process {\textendash} from mathematical equations down to C++ code {\textendash} is performed by the Devito compiler through a series of intermediate representations. Several performance optimizations are introduced, including advanced common sub-expressions elimination, tiling and parallelization. Some of these are obtained through well-established stencil optimizers, integrated in the back-end of the Devito compiler. The architecture of the Devito compiler, as well as the performance optimizations that are applied when generating code, are presented. The effectiveness of such performance optimizations is demonstrated using operators drawn from seismic imaging applications.},
	keywords = {compiler, finite difference method, performance optimization, stencil, structured grid, symbolic processing},
	doi = {10.1145/3374916},
	url = {https://slim.gatech.edu/Publications/Public/Journals/ACMTOMS/2020/luporini2018aap/luporini2018aap.pdf},
	author = {Fabio Luporini and Mathias Louboutin and Michael Lange and Navjot Kukreja and Philipp A. Witte and Jan H{\"u}ckelheim and Charles Yount and Paul H. J. Kelly and Felix J. Herrmann and Gerard J. Gorman}
}
@conference {herrmann2019EAGEHPCaii,
	title = {Accelerating ideation and innovation cheaply in the Cloud the power of abstraction, collaboration and reproducibility},
	booktitle = {4th EAGE Workshop on High-performance Computing},
	year = {2019},
	note = {(EAGE HPC Workshop, Dubai)},
	month = {10},
	keywords = {cloud, devito, EAGE, HPC, JUDI},
	presentation = {https://slim.gatech.edu/Publications/Public/Conferences/EAGEHPC/2019/herrmann2019EAGEHPCaii/herrmann2019EAGEHPCaii_pres.pdf},
	author = {Felix J. Herrmann and Charles Jones and Gerard Gorman and Jan H{\"u}ckelheim and Keegan Lensink and Paul H. J. Kelly and Navjot Kukreja and Henryk Modzelewski and Michael Lange and Mathias Louboutin and Fabio Luporini and James Selvages and Philipp A. Witte}
}
